Molecular structure of the intact bacterial flagellar basal body

Nature Microbiology Springer Nature 6:6 (2021) 712-721

Authors:

Steven Johnson, Emily J Furlong, Justin C Deme, Ashley L Nord, Joseph JE Caesar, Fabienne FV Chevance, Richard M Berry, Kelly T Hughes, Susan M Lea

A comprehensive study of biocompatibility of detonation nanodiamonds

Journal of Molecular Liquids Elsevier 332 (2021) 115763

Authors:

Gregory M Berdichevskiy, Lubov V Vasina, Sergei V Ageev, Anatolii A Meshcheriakov, Mikhail A Galkin, Robert R Ishmukhametov, Alexei V Nashchekin, Demid A Kirilenko, Andrey V Petrov, Sofia D Martynova, Konstantin N Semenov, Vladimir V Sharoyko

Abstract:

The article describes a complex study of detonation nanodiamonds (DND) aqueous dispersions. In this research, DND sample was characterised by means of IR, NMR spectroscopy, TEM, thermogravimetric analysis, size distribution, and ζ-potentials. It was shown that DND sample includes several surface groups, mainly hydroxylic, carboxylic, and carbonyl ones. Dynamic light scattering results revealed that in the concentration range C = 0.002–0.3 wt%, DND nanoparticles size is equal to 55 ± 5 nm. It was demonstrated that DND possessed weak antiradical activity, had an inhibitory effect on F1F0-ATPase activity, almost did not affect platelet aggregation, formed a stronger complex with human serum albumin (HSA) in subdomain IB (digitoxin, Kb = 20.0 ± 2.4 l·g−1) and a less strong complex in subdomain IIA (warfarin, Kb = 3.7 ± 0.1 l·g−1), inhibited the esterase activity of HSA, DND dispersions (C = 0.0012–0.15 wt%) revealed genotoxic effect towards PBMCs, did not affect cellular proliferation in the experiment with HEK293 cell line, did not reveal cytotoxic effect up to 0.01 wt%. Using DFT and MD approaches allowed us to perform a simulation of interaction between DND nanoparticle and water molecules.

A test of the cosmological principle with quasars

Astrophysical Journal Letters IOP Publishing 908:2 (2021) L51

Authors:

Nathan Secrest, Sebastian Von Hausegger, Mohamed Rameez, Roya Mohayaee, Subir Sarkar, Jacques Colin

Abstract:

We study the large-scale anisotropy of the universe by measuring the dipole in the angular distribution of a flux-limited, all-sky sample of 1.36 million quasars observed by the Wide-field Infrared Survey Explorer (WISE). This sample is derived from the new CatWISE2020 catalog, which contains deep photometric measurements at 3.4 and 4.6 μm from the cryogenic, post-cryogenic, and reactivation phases of the WISE mission. While the direction of the dipole in the quasar sky is similar to that of the cosmic microwave background (CMB), its amplitude is over twice as large as expected, rejecting the canonical, exclusively kinematic interpretation of the CMB dipole with a p-value of 5 × 10−7 (4.9σ for a normal distribution, one-sided), the highest significance achieved to date in such studies. Our results are in conflict with the cosmological principle, a foundational assumption of the concordance ΛCDM model.

The switching mechanism of the bacterial rotary motor combines tight regulation with inherent flexibility

The EMBO journal EMBO Press 40:6 (2021) e104683

Authors:

Oshri Afanzar, Diana Di Paolo, Miriam Eisenstein, Kohava Levi, Anne Plochowietz, Achillefs N Kapanidis, Richard Michael Berry, Michael Eisenbach

Abstract:

Regulatory switches are wide spread in many biological systems. Uniquely among them, the switch of the bacterial flagellar motor is not an on/off switch but rather controls the motor's direction of rotation in response to binding of the signaling protein CheY. Despite its extensive study, the molecular mechanism underlying this switch has remained largely unclear. Here, we resolved the functions of each of the three CheY-binding sites at the switch in E. coli, as well as their different dependencies on phosphorylation and acetylation of CheY. Based on this, we propose that CheY motor switching activity is potentiated upon binding to the first site. Binding of potentiated CheY to the second site produces unstable switching and at the same time enables CheY binding to the third site, an event that stabilizes the switched state. Thereby, this mechanism exemplifies a unique combination of tight motor regulation with inherent switching flexibility.

Green algae scatter off sharp viscosity gradients

Scientific Reports Springer Nature 11:1 (2021) 399

Authors:

Simone Coppola, Vasily Kantsler